| TF name | Position | PWM scan score |
| ArcA | 77-137 | 14.736 |
| XylR | 117-134 | 12.129 |
| RhaS | 189-205 | 11.285 |
| IHF | 99-111 | 10.549 |
| MelR | 14-31 | 10.279 |
| AraC | 268-285 | 9.796 |
| ModE | 371-397 | 9.657 |
| FruR | 39-56 | 9.433 |
| ArgP | 296-308 | 9.174 |
| NarP | 219-225 | 8.982 |
| RcsB | 256-269 | 8.616 |
| Fis | 277-297 | 8.389 |
| PhoB | 87-106 | 8.364 |
| GlpR | 239-258 | 8.342 |
| Nac | 251-265 | 7.661 |
| ArgR | 96-111 | 7.570 |
| LacI | 2-22 | 7.551 |
| FadR | 381-397 | 7.436 |
| TorR | 107-116 | 7.372 |
| NarL | 32-38 | 7.309 |
| AgaR | 101-124 | 7.239 |
| FNR | 365-386 | 7.063 |
| Lrp | 380-391 | 7.022 |
| H-NS | 255-269 | 6.985 |
| DeoR | 325-340 | 6.863 |
| GntR | 169-188 | 6.701 |
| GadE | 365-384 | 6.648 |
| Rob | 250-270 | 6.598 |
| MarA | 38-58 | 6.543 |
| UxuR | 115-132 | 6.482 |
| OmpR | 89-108 | 6.228 |
| LexA | 380-399 | 5.627 |
| DnaA | 106-114 | 5.602 |
| CRP | 321-342 | 5.602 |
| PurR | 21-36 | 5.394 |
| CpxR | 261-275 | 5.378 |
| Ada | 144-171 | 5.356 |
| SoxS | 85-102 | 5.080 |