| TF name | Position | PWM scan score |
| NorR | 224-240 | 12.885 |
| OxyR | 190-234 | 11.137 |
| GntR | 288-307 | 10.957 |
| DeoR | 383-398 | 10.228 |
| IdnR | 86-101 | 10.171 |
| Fur | 296-310 | 9.512 |
| MarA | 72-92 | 9.215 |
| PhoB | 252-271 | 9.002 |
| IHF | 302-314 | 8.693 |
| AraC | 351-368 | 8.607 |
| TorR | 350-359 | 8.551 |
| CRP | 15-36 | 8.139 |
| GlpR | 13-32 | 8.092 |
| Rob | 210-230 | 7.809 |
| H-NS | 114-128 | 7.492 |
| SoxS | 74-91 | 7.449 |
| CysB | 351-392 | 7.379 |
| MalT | 148-157 | 7.096 |
| LexA | 347-366 | 7.066 |
| DnaA | 337-345 | 6.944 |
| PurR | 202-217 | 6.855 |
| Fis | 43-63 | 6.854 |
| Nac | 79-93 | 6.838 |
| GadE | 364-383 | 6.793 |
| NarP | 151-157 | 6.421 |
| NarL | 101-107 | 6.268 |
| XylR | 354-371 | 6.098 |
| RhaS | 201-217 | 5.947 |
| MelR | 123-140 | 5.894 |
| AgaR | 358-381 | 5.837 |
| MetR | 232-255 | 5.836 |
| PhoP | 352-368 | 5.822 |
| ArgP | 250-262 | 5.659 |
| CpxR | 374-388 | 5.591 |
| NtrC | 204-220 | 5.449 |
| FadR | 242-258 | 5.302 |