| TF name | Position | PWM scan score |
| FruR | 277-294 | 10.308 |
| MetJ | 143-150 | 10.091 |
| MetR | 48-71 | 9.719 |
| GntR | 206-225 | 9.321 |
| DeoR | 375-390 | 9.107 |
| RcsB | 386-399 | 9.016 |
| SoxS | 374-391 | 8.292 |
| MalT | 83-92 | 8.209 |
| ArgR | 100-115 | 7.912 |
| NarP | 20-26 | 7.860 |
| Fis | 94-114 | 7.860 |
| CRP | 305-326 | 7.799 |
| FNR | 94-115 | 7.717 |
| PurR | 276-291 | 7.626 |
| H-NS | 91-105 | 7.624 |
| LexA | 258-277 | 7.381 |
| DnaA | 364-372 | 7.204 |
| AraC | 354-371 | 7.117 |
| ModE | 94-120 | 7.084 |
| IHF | 103-115 | 6.794 |
| GalS | 276-291 | 6.752 |
| GalR | 276-291 | 6.752 |
| GadE | 96-115 | 6.624 |
| CytR | 358-397 | 6.373 |
| ArgP | 259-271 | 6.123 |
| TorR | 316-325 | 5.984 |
| IdnR | 142-157 | 5.968 |
| CpxR | 309-323 | 5.843 |
| GlpR | 204-223 | 5.751 |
| OmpR | 106-125 | 5.379 |
| Lrp | 258-269 | 5.312 |
| Rob | 378-398 | 5.201 |
| NarL | 287-293 | 5.166 |
| XylR | 301-318 | 5.012 |