| TF name | Position | PWM scan score |
| UlaR | 125-144 | 15.907 |
| CysB | 220-261 | 10.886 |
| PhoP | 274-290 | 10.819 |
| RcsB | 103-116 | 9.412 |
| LacI | 299-319 | 8.605 |
| IHF | 246-258 | 8.594 |
| AgaR | 91-114 | 8.284 |
| NarP | 179-185 | 7.860 |
| DnaA | 106-114 | 7.683 |
| FNR | 240-261 | 7.278 |
| MalT | 255-264 | 7.257 |
| H-NS | 235-249 | 7.057 |
| CpxR | 132-146 | 6.621 |
| Lrp | 33-44 | 6.158 |
| TorR | 181-190 | 5.984 |
| Rob | 238-258 | 5.566 |
| MarA | 194-214 | 5.284 |
| MelR | 78-95 | 5.057 |
| AraC | 153-170 | 5.032 |
| ArcA | 77-137 | 5.015 |