| TF name | Position | PWM scan score |
| MetJ | 71-78 | 11.792 |
| Nac | 165-179 | 10.155 |
| FNR | 65-86 | 9.552 |
| AraC | 140-157 | 9.126 |
| PurR | 189-204 | 8.990 |
| GntR | 82-101 | 8.858 |
| OmpR | 165-184 | 8.826 |
| Rob | 227-247 | 8.657 |
| TyrR | 130-151 | 8.613 |
| GadE | 136-155 | 8.591 |
| Fis | 95-115 | 8.188 |
| MarA | 125-145 | 7.508 |
| MalT | 37-46 | 7.442 |
| GcvA | 64-92 | 7.432 |
| NtrC | 263-279 | 7.321 |
| NarL | 155-161 | 7.309 |
| RcsB | 71-84 | 7.235 |
| MelR | 357-374 | 7.189 |
| H-NS | 168-182 | 7.114 |
| DnaA | 234-242 | 6.990 |
| RhaS | 204-220 | 6.924 |
| FadR | 72-88 | 6.806 |
| CRP | 179-200 | 6.222 |
| NagC | 160-182 | 6.144 |
| ArgP | 135-147 | 6.116 |
| FruR | 225-242 | 5.794 |
| NarP | 26-32 | 5.698 |
| Lrp | 111-122 | 5.667 |
| UxuR | 139-156 | 5.311 |
| IHF | 65-77 | 5.261 |