| TF name | Position | PWM scan score |
| ArcA | 327-387 | 15.633 |
| GadE | 379-398 | 11.817 |
| GalR | 320-335 | 9.195 |
| GalS | 320-335 | 9.195 |
| PspF | 282-298 | 9.142 |
| H-NS | 364-378 | 8.989 |
| OmpR | 370-389 | 8.988 |
| Fis | 365-385 | 8.925 |
| ArgP | 343-355 | 8.804 |
| GcvA | 357-385 | 8.377 |
| NarP | 77-83 | 8.308 |
| MarA | 284-304 | 8.157 |
| ArgR | 5-20 | 8.019 |
| Nac | 336-350 | 7.625 |
| CysB | 324-365 | 7.432 |
| CRP | 176-197 | 7.432 |
| RhaS | 179-195 | 7.274 |
| SoxS | 364-381 | 7.091 |
| Lrp | 365-376 | 6.881 |
| PhoB | 356-375 | 6.850 |
| NorR | 124-140 | 6.562 |
| FNR | 242-263 | 6.487 |
| IHF | 77-89 | 6.479 |
| NarL | 148-154 | 6.415 |
| TorR | 124-133 | 6.366 |
| MetJ | 3-10 | 6.318 |
| Rob | 201-221 | 6.078 |
| UxuR | 316-333 | 5.997 |
| CpxR | 170-184 | 5.346 |
| AraC | 287-304 | 5.150 |