| TF name | Position | PWM scan score |
| XylR | 1-18 | 12.751 |
| IHF | 209-221 | 10.379 |
| NorR | 349-365 | 10.309 |
| FNR | 200-221 | 9.338 |
| CueR | 374-392 | 9.124 |
| UlaR | 209-228 | 8.591 |
| GlpR | 196-215 | 8.586 |
| NarL | 310-316 | 8.190 |
| FruR | 265-282 | 7.589 |
| NtrC | 271-287 | 6.754 |
| CRP | 173-194 | 6.578 |
| TorR | 205-214 | 6.394 |
| AraC | 60-77 | 6.248 |
| RhaS | 327-343 | 6.170 |
| TyrR | 206-227 | 6.139 |
| DeoR | 313-328 | 6.139 |
| GntR | 66-85 | 6.006 |
| NarP | 292-298 | 5.627 |
| MalT | 376-385 | 5.591 |
| ArgP | 365-377 | 5.581 |
| OmpR | 202-221 | 5.537 |
| Nac | 277-291 | 5.314 |
| Fis | 195-215 | 5.241 |
| MetJ | 60-67 | 5.185 |