| TF name | Position | PWM scan score |
| PhoB | 267-286 | 13.836 |
| CysB | 142-183 | 11.515 |
| MarA | 152-172 | 10.704 |
| MelR | 346-363 | 10.010 |
| IHF | 309-321 | 9.633 |
| H-NS | 313-327 | 8.392 |
| PhoP | 110-126 | 8.172 |
| CRP | 289-310 | 8.117 |
| ArcA | 289-349 | 8.070 |
| XylR | 152-169 | 8.022 |
| RcsB | 6-19 | 7.933 |
| MetR | 303-326 | 7.840 |
| Nac | 329-343 | 7.781 |
| AraC | 376-393 | 7.556 |
| FNR | 278-299 | 7.460 |
| CytR | 253-292 | 7.452 |
| NarL | 338-344 | 7.309 |
| Lrp | 155-166 | 7.200 |
| ModE | 124-150 | 7.129 |
| DnaA | 113-121 | 7.095 |
| DcuR | 271-325 | 6.830 |
| NarP | 26-32 | 6.598 |
| Rob | 205-225 | 6.521 |
| Fis | 359-379 | 6.394 |
| Fur | 278-292 | 6.357 |
| TyrR | 272-293 | 5.871 |
| Mlc | 258-280 | 5.559 |
| TorR | 319-328 | 5.463 |
| AgaR | 265-288 | 5.445 |
| OmpR | 335-354 | 5.144 |
| MetJ | 385-392 | 5.091 |