| TF name | Position | PWM scan score |
| Nac | 3-17 | 15.655 |
| ArgP | 385-397 | 12.653 |
| ArcA | 334-394 | 12.609 |
| MalT | 265-274 | 10.259 |
| PhoP | 380-396 | 9.572 |
| OmpR | 376-395 | 9.368 |
| ModE | 89-115 | 8.591 |
| TorR | 47-56 | 8.141 |
| NarL | 146-152 | 7.713 |
| GadE | 374-393 | 7.669 |
| DeoR | 76-91 | 7.360 |
| SoxS | 356-373 | 7.343 |
| GcvA | 276-304 | 7.291 |
| IHF | 379-391 | 7.177 |
| CRP | 370-391 | 6.953 |
| H-NS | 383-397 | 6.833 |
| FNR | 226-247 | 6.738 |
| MarA | 224-244 | 6.511 |
| FruR | 40-57 | 6.325 |
| Rob | 279-299 | 6.106 |
| Fis | 4-24 | 5.982 |
| FadR | 382-398 | 5.961 |
| GlpR | 370-389 | 5.782 |
| NarP | 101-107 | 5.581 |
| Lrp | 106-117 | 5.557 |
| MetR | 73-96 | 5.525 |
| PhoB | 327-346 | 5.520 |
| GntR | 305-324 | 5.201 |
| DnaA | 360-368 | 5.140 |
| UlaR | 79-98 | 5.041 |