| TF name | Position | PWM scan score |
| GalR | 148-163 | 11.351 |
| GalS | 148-163 | 11.351 |
| CRP | 168-189 | 11.140 |
| GadE | 216-235 | 10.833 |
| CysB | 250-291 | 10.728 |
| FNR | 171-192 | 10.622 |
| PhoB | 61-80 | 10.592 |
| NagC | 215-237 | 10.439 |
| H-NS | 265-279 | 10.370 |
| TrpR | 143-160 | 10.133 |
| XylR | 68-85 | 10.115 |
| CueR | 105-123 | 9.779 |
| OmpR | 216-235 | 9.742 |
| ArcA | 33-93 | 9.556 |
| MarA | 18-38 | 9.070 |
| TyrR | 271-292 | 8.473 |
| NarP | 307-313 | 8.308 |
| CpxR | 46-60 | 8.261 |
| Ada | 309-336 | 8.002 |
| Fis | 177-197 | 7.892 |
| ArgP | 385-397 | 7.887 |
| Lrp | 244-255 | 7.694 |
| Nac | 209-223 | 7.443 |
| MelR | 22-39 | 7.440 |
| IHF | 229-241 | 7.221 |
| ModE | 206-232 | 7.171 |
| FadR | 285-301 | 7.157 |
| DnaA | 32-40 | 7.095 |
| NarL | 140-146 | 6.918 |
| PhoP | 65-81 | 6.888 |
| GlpR | 176-195 | 6.755 |
| RhaS | 97-113 | 6.244 |
| Mlc | 213-235 | 6.110 |
| AraC | 259-276 | 5.784 |
| Fur | 54-68 | 5.639 |
| MalT | 345-354 | 5.612 |
| GcvA | 211-239 | 5.558 |
| Rob | 274-294 | 5.449 |
| UxuR | 268-285 | 5.192 |
| MetJ | 207-214 | 5.091 |