| TF name | Position | PWM scan score |
| AgaR | 349-372 | 14.640 |
| TyrR | 274-295 | 12.308 |
| ModE | 267-293 | 12.200 |
| AraC | 331-348 | 11.157 |
| ArcA | 267-327 | 11.155 |
| GadE | 358-377 | 11.138 |
| Fis | 328-348 | 10.825 |
| MarA | 11-31 | 10.668 |
| PhoB | 246-265 | 9.391 |
| H-NS | 308-322 | 9.223 |
| Lrp | 305-316 | 8.842 |
| CpxR | 236-250 | 8.536 |
| GlpR | 327-346 | 8.469 |
| ArgP | 182-194 | 8.416 |
| CRP | 104-125 | 8.319 |
| OmpR | 349-368 | 8.184 |
| XylR | 275-292 | 8.109 |
| NorR | 229-245 | 8.084 |
| NarP | 191-197 | 7.860 |
| IHF | 275-287 | 7.627 |
| SoxS | 127-144 | 7.511 |
| FNR | 130-151 | 7.366 |
| MelR | 133-150 | 7.152 |
| PurR | 372-387 | 7.051 |
| Mlc | 283-305 | 6.882 |
| PspF | 161-177 | 6.859 |
| RcsB | 348-361 | 6.708 |
| DeoR | 331-346 | 6.617 |
| NarL | 186-192 | 6.515 |
| NagC | 170-192 | 6.483 |
| GntR | 122-141 | 6.275 |
| DnaA | 329-337 | 6.141 |
| Rob | 227-247 | 5.976 |
| CytR | 52-91 | 5.962 |
| PhoP | 13-29 | 5.950 |
| MetJ | 26-33 | 5.812 |
| Nac | 327-341 | 5.810 |
| FadR | 95-111 | 5.432 |
| GalS | 66-81 | 5.381 |
| GalR | 66-81 | 5.381 |
| CysB | 144-185 | 5.380 |
| UlaR | 104-123 | 5.299 |
| MalT | 244-253 | 5.130 |