| TF name | Position | PWM scan score |
| CytR | 170-209 | 14.339 |
| ArcA | 250-310 | 14.145 |
| OmpR | 169-188 | 12.934 |
| H-NS | 303-317 | 12.520 |
| Mlc | 288-310 | 12.379 |
| PurR | 131-146 | 12.332 |
| OxyR | 269-313 | 11.186 |
| Rob | 167-187 | 11.167 |
| NagC | 331-353 | 10.757 |
| MarA | 163-183 | 9.985 |
| GalR | 131-146 | 9.897 |
| GalS | 131-146 | 9.897 |
| Lrp | 363-374 | 9.723 |
| DnaA | 141-149 | 9.659 |
| GlpR | 172-191 | 9.608 |
| PspF | 188-204 | 9.312 |
| IHF | 221-233 | 9.077 |
| NarP | 372-378 | 8.982 |
| TorR | 280-289 | 8.822 |
| RcsB | 251-264 | 8.692 |
| FNR | 278-299 | 8.359 |
| SoxS | 335-352 | 8.354 |
| CysB | 350-391 | 8.343 |
| PhoP | 282-298 | 8.304 |
| DeoR | 90-105 | 8.172 |
| PhoB | 253-272 | 7.804 |
| NarL | 166-172 | 7.713 |
| ModE | 192-218 | 7.674 |
| Fis | 278-298 | 7.629 |
| UlaR | 263-282 | 7.527 |
| XylR | 190-207 | 7.489 |
| Nac | 255-269 | 7.444 |
| GadE | 333-352 | 7.359 |
| AraC | 257-274 | 6.963 |
| Ada | 154-181 | 6.718 |
| CpxR | 323-337 | 6.704 |
| UxuR | 13-30 | 6.482 |
| NtrC | 93-109 | 6.327 |
| CRP | 164-185 | 6.300 |
| ArgR | 199-214 | 6.145 |
| Fur | 286-300 | 6.108 |
| MetJ | 154-161 | 6.040 |
| GcvA | 288-316 | 6.022 |
| GntR | 326-345 | 5.641 |
| NorR | 343-359 | 5.561 |
| MelR | 320-337 | 5.317 |
| AgaR | 34-57 | 5.033 |