| TF name | Position | PWM scan score |
| MalT | 6-15 | 11.390 |
| PhoB | 350-369 | 9.150 |
| NarL | 289-295 | 8.619 |
| OmpR | 238-257 | 7.777 |
| XylR | 39-56 | 7.537 |
| AraC | 363-380 | 7.396 |
| RhaS | 102-118 | 7.330 |
| GadE | 350-369 | 7.291 |
| NarP | 239-245 | 7.091 |
| RcsB | 249-262 | 6.612 |
| DnaA | 254-262 | 6.605 |
| Lrp | 249-260 | 6.570 |
| CpxR | 238-252 | 6.426 |
| Nac | 264-278 | 6.361 |
| SoxS | 171-188 | 6.235 |
| TorR | 302-311 | 5.883 |
| NtrC | 374-390 | 5.784 |
| PspF | 146-162 | 5.710 |
| PurR | 94-109 | 5.563 |
| CRP | 302-323 | 5.496 |
| FNR | 350-371 | 5.434 |
| Mlc | 41-63 | 5.410 |
| PhoP | 130-146 | 5.202 |
| MetJ | 305-312 | 5.040 |