| TF name | Position | PWM scan score |
| NagC | 14-36 | 13.304 |
| ArcA | 206-266 | 13.050 |
| AraC | 59-76 | 11.080 |
| ArgR | 105-120 | 10.616 |
| UlaR | 219-238 | 9.824 |
| Nac | 209-223 | 8.885 |
| LexA | 103-122 | 8.686 |
| AgaR | 220-243 | 8.641 |
| Ada | 96-123 | 8.599 |
| DnaA | 16-24 | 8.576 |
| MarA | 319-339 | 8.431 |
| DeoR | 215-230 | 8.260 |
| Fis | 210-230 | 8.254 |
| NorR | 329-345 | 8.116 |
| IHF | 99-111 | 7.829 |
| UxuR | 29-46 | 7.469 |
| H-NS | 27-41 | 7.441 |
| FNR | 93-114 | 7.351 |
| PhoB | 210-229 | 7.184 |
| OmpR | 129-148 | 7.075 |
| FadR | 270-286 | 6.912 |
| CueR | 365-383 | 6.801 |
| MelR | 349-366 | 6.645 |
| Lrp | 219-230 | 6.636 |
| CRP | 99-120 | 6.587 |
| RcsB | 217-230 | 6.541 |
| ModE | 37-63 | 6.506 |
| RhaS | 240-256 | 6.271 |
| SoxS | 321-338 | 5.919 |
| Rob | 177-197 | 5.504 |
| NtrC | 186-202 | 5.484 |
| GalR | 33-48 | 5.362 |
| GalS | 33-48 | 5.362 |
| PspF | 227-243 | 5.351 |
| NarL | 212-218 | 5.282 |
| GntR | 237-256 | 5.265 |
| GadE | 179-198 | 5.252 |
| GcvA | 214-242 | 5.233 |
| CpxR | 224-238 | 5.173 |