| TF name | Position | PWM scan score |
| NorR | 61-77 | 12.352 |
| Fur | 95-109 | 9.298 |
| IHF | 334-346 | 8.717 |
| DnaA | 156-164 | 8.624 |
| UlaR | 150-169 | 8.569 |
| GlpR | 279-298 | 8.550 |
| FNR | 346-367 | 8.418 |
| Fis | 50-70 | 8.246 |
| PurR | 334-349 | 8.105 |
| AraC | 68-85 | 8.083 |
| Lrp | 302-313 | 8.028 |
| CysB | 303-344 | 7.899 |
| CueR | 239-257 | 7.790 |
| CpxR | 314-328 | 7.658 |
| Mlc | 304-326 | 7.563 |
| Rob | 59-79 | 7.499 |
| LacI | 81-101 | 7.373 |
| MalT | 12-21 | 7.301 |
| Nac | 344-358 | 6.701 |
| H-NS | 364-378 | 6.679 |
| CRP | 279-300 | 6.665 |
| GntR | 53-72 | 6.454 |
| RcsB | 225-238 | 6.427 |
| GalS | 334-349 | 6.415 |
| GalR | 334-349 | 6.415 |
| TorR | 351-360 | 6.394 |
| MarA | 193-213 | 6.329 |
| SoxS | 88-105 | 6.316 |
| UxuR | 219-236 | 6.254 |
| TyrR | 94-115 | 6.142 |
| ArcA | 202-262 | 5.974 |
| PspF | 218-234 | 5.896 |
| RhaS | 155-171 | 5.874 |
| XylR | 220-237 | 5.656 |
| PhoB | 362-381 | 5.552 |
| IdnR | 345-360 | 5.435 |
| NarL | 304-310 | 5.408 |
| ArgP | 217-229 | 5.148 |
| NarP | 386-392 | 5.094 |
| OxyR | 20-64 | 5.073 |
| ArgR | 331-346 | 5.017 |