| TF name | Position | PWM scan score |
| DnaA | 366-374 | 11.802 |
| CytR | 360-399 | 10.721 |
| PhoP | 131-147 | 9.594 |
| AraC | 105-122 | 8.943 |
| OmpR | 138-157 | 8.825 |
| Nac | 360-374 | 8.718 |
| IHF | 222-234 | 8.556 |
| FNR | 114-135 | 8.525 |
| CRP | 225-246 | 8.072 |
| ArgP | 363-375 | 8.030 |
| IdnR | 94-109 | 7.706 |
| FruR | 381-398 | 7.363 |
| NarL | 75-81 | 7.310 |
| Rob | 136-156 | 7.181 |
| MetJ | 311-318 | 7.046 |
| LacI | 276-296 | 6.975 |
| Ada | 179-206 | 6.969 |
| Lrp | 361-372 | 6.686 |
| NarP | 30-36 | 6.598 |
| TorR | 367-376 | 6.520 |
| MelR | 317-334 | 6.389 |
| RcsB | 190-203 | 6.363 |
| FadR | 255-271 | 6.318 |
| GadE | 327-346 | 5.872 |
| CpxR | 90-104 | 5.784 |
| H-NS | 216-230 | 5.244 |