| TF name | Position | PWM scan score |
| Mlc | 303-325 | 11.940 |
| FNR | 114-135 | 10.923 |
| TyrR | 276-297 | 10.575 |
| LexA | 110-129 | 9.884 |
| RhaS | 313-329 | 9.779 |
| MelR | 73-90 | 9.734 |
| MarA | 328-348 | 9.698 |
| Nac | 25-39 | 9.251 |
| IHF | 301-313 | 8.860 |
| RcsB | 139-152 | 8.852 |
| NarP | 366-372 | 8.841 |
| ArgP | 358-370 | 8.804 |
| OmpR | 153-172 | 8.742 |
| SoxS | 330-347 | 8.052 |
| LacI | 278-298 | 8.005 |
| MalT | 232-241 | 7.866 |
| CRP | 312-333 | 7.827 |
| GntR | 243-262 | 7.726 |
| Fur | 134-148 | 7.699 |
| AgaR | 260-283 | 7.645 |
| NorR | 300-316 | 7.584 |
| TorR | 300-309 | 7.015 |
| FadR | 361-377 | 6.813 |
| ArcA | 100-160 | 6.744 |
| H-NS | 309-323 | 6.660 |
| PhoB | 129-148 | 6.607 |
| XylR | 275-292 | 6.553 |
| UlaR | 18-37 | 6.200 |
| CpxR | 301-315 | 6.102 |
| NagC | 305-327 | 6.042 |
| Rob | 379-399 | 5.916 |
| Lrp | 26-37 | 5.845 |
| GcvA | 275-303 | 5.837 |
| Fis | 180-200 | 5.715 |
| GadE | 155-174 | 5.709 |
| FruR | 136-153 | 5.696 |
| NarL | 308-314 | 5.634 |
| DeoR | 286-301 | 5.420 |
| AraC | 21-38 | 5.336 |
| MetR | 281-304 | 5.294 |