| TF name | Position | PWM scan score |
| GcvA | 110-138 | 16.447 |
| ArcA | 104-164 | 12.685 |
| Fis | 117-137 | 12.222 |
| CRP | 90-111 | 11.104 |
| NorR | 326-342 | 10.523 |
| CysB | 210-251 | 9.086 |
| IHF | 312-324 | 9.063 |
| TorR | 52-61 | 8.200 |
| NarP | 177-183 | 8.154 |
| FNR | 93-114 | 8.137 |
| SoxS | 8-25 | 8.120 |
| Nac | 152-166 | 8.026 |
| GlpR | 127-146 | 7.737 |
| NarL | 287-293 | 7.577 |
| PhoB | 106-125 | 7.221 |
| RhaS | 296-312 | 7.146 |
| GadE | 115-134 | 6.845 |
| Lrp | 206-217 | 6.668 |
| OmpR | 143-162 | 6.662 |
| CpxR | 375-389 | 6.425 |
| H-NS | 159-173 | 6.243 |
| MarA | 128-148 | 6.201 |
| FruR | 53-70 | 6.196 |
| UlaR | 206-225 | 6.162 |
| TyrR | 110-131 | 6.101 |
| AraC | 186-203 | 5.974 |
| MelR | 125-142 | 5.932 |
| MetJ | 99-106 | 5.904 |
| DeoR | 314-329 | 5.356 |
| XylR | 301-318 | 5.335 |
| MalT | 60-69 | 5.199 |
| ArgP | 123-135 | 5.061 |