| TF name | Position | PWM scan score |
| OmpR | 196-215 | 10.818 |
| NarP | 319-325 | 9.938 |
| MarA | 88-108 | 9.893 |
| RcsB | 385-398 | 9.251 |
| FNR | 88-109 | 9.210 |
| PhoB | 45-64 | 9.101 |
| Nac | 376-390 | 8.704 |
| Fur | 381-395 | 8.694 |
| RhaS | 127-143 | 8.619 |
| MetR | 34-57 | 8.403 |
| IHF | 189-201 | 7.820 |
| GadE | 377-396 | 7.647 |
| ArgR | 293-308 | 7.533 |
| TyrR | 374-395 | 7.350 |
| GntR | 341-360 | 7.239 |
| H-NS | 344-358 | 6.932 |
| Lrp | 387-398 | 6.666 |
| GcvA | 167-195 | 6.633 |
| XylR | 179-196 | 6.626 |
| UxuR | 135-152 | 6.609 |
| PhoP | 351-367 | 6.588 |
| MalT | 110-119 | 6.395 |
| GalS | 138-153 | 6.282 |
| GalR | 138-153 | 6.282 |
| FadR | 300-316 | 6.017 |
| DeoR | 293-308 | 5.222 |
| MetJ | 16-23 | 5.218 |
| AraC | 372-389 | 5.207 |
| NarL | 324-330 | 5.139 |
| FruR | 5-22 | 5.065 |
| ArgP | 98-110 | 5.061 |