| TF name | Position | PWM scan score |
| GlpR | 170-189 | 12.780 |
| XylR | 68-85 | 9.820 |
| DnaA | 293-301 | 8.868 |
| NtrC | 373-389 | 8.762 |
| LacI | 336-356 | 8.738 |
| Fis | 378-398 | 8.699 |
| FadR | 301-317 | 8.596 |
| Lrp | 290-301 | 8.520 |
| NagC | 15-37 | 8.493 |
| ModE | 148-174 | 8.411 |
| CRP | 377-398 | 7.472 |
| TyrR | 330-351 | 7.403 |
| MarA | 101-121 | 7.276 |
| RhaS | 241-257 | 7.256 |
| CueR | 306-324 | 7.251 |
| NarL | 323-329 | 7.107 |
| TorR | 152-161 | 7.009 |
| DeoR | 36-51 | 6.703 |
| GntR | 55-74 | 6.167 |
| AraC | 214-231 | 6.154 |
| MetJ | 159-166 | 6.013 |
| MelR | 331-348 | 5.694 |
| Nac | 350-364 | 5.502 |
| MalT | 15-24 | 5.226 |