| TF name | Position | PWM scan score |
| MetJ | 160-167 | 10.479 |
| Rob | 294-314 | 10.242 |
| MelR | 146-163 | 9.665 |
| H-NS | 139-153 | 9.381 |
| FadR | 348-364 | 9.133 |
| SoxS | 231-248 | 9.060 |
| NarL | 14-20 | 8.619 |
| XylR | 292-309 | 8.373 |
| Lrp | 319-330 | 8.344 |
| PhoP | 332-348 | 8.077 |
| Nac | 5-19 | 8.028 |
| RcsB | 347-360 | 7.824 |
| TorR | 74-83 | 7.822 |
| AraC | 101-118 | 7.663 |
| DeoR | 182-197 | 7.396 |
| CueR | 306-324 | 7.388 |
| NtrC | 136-152 | 7.255 |
| Fis | 132-152 | 6.794 |
| FNR | 262-283 | 6.723 |
| PhoB | 212-231 | 6.613 |
| GcvA | 316-344 | 6.212 |
| IHF | 205-217 | 6.065 |
| CRP | 282-303 | 6.011 |
| OmpR | 268-287 | 5.579 |
| RhaS | 133-149 | 5.488 |
| DnaA | 215-223 | 5.061 |
| ArgR | 345-360 | 5.046 |
| MarA | 205-225 | 5.002 |