| TF name | Position | PWM scan score |
| MetR | 312-335 | 14.097 |
| AraC | 367-384 | 13.291 |
| FruR | 333-350 | 12.996 |
| UlaR | 297-316 | 12.798 |
| ArcA | 105-165 | 12.302 |
| IHF | 367-379 | 11.332 |
| CytR | 349-388 | 11.307 |
| AgaR | 339-362 | 10.662 |
| RcsB | 220-233 | 10.311 |
| ArgR | 359-374 | 10.207 |
| MalT | 47-56 | 9.545 |
| MarA | 15-35 | 9.267 |
| Nac | 107-121 | 9.267 |
| Ada | 134-161 | 8.777 |
| DnaA | 180-188 | 8.389 |
| CpxR | 193-207 | 8.212 |
| LacI | 30-50 | 7.898 |
| Lrp | 360-371 | 7.746 |
| Mlc | 372-394 | 7.700 |
| OmpR | 149-168 | 7.473 |
| NarP | 242-248 | 7.426 |
| ModE | 356-382 | 7.324 |
| PhoB | 325-344 | 7.027 |
| NagC | 375-397 | 6.991 |
| GalR | 265-280 | 6.924 |
| GalS | 265-280 | 6.924 |
| FNR | 357-378 | 6.851 |
| PspF | 128-144 | 6.827 |
| NarL | 12-18 | 6.678 |
| IdnR | 347-362 | 6.634 |
| SoxS | 379-396 | 6.278 |
| Fis | 150-170 | 6.081 |
| CysB | 132-173 | 6.051 |
| UxuR | 175-192 | 6.026 |
| Fur | 140-154 | 5.883 |
| TorR | 366-375 | 5.883 |
| H-NS | 160-174 | 5.598 |
| GntR | 377-396 | 5.591 |
| GlpR | 111-130 | 5.292 |
| MelR | 335-352 | 5.183 |