| TF name | Position | PWM scan score |
| OmpR | 304-323 | 17.640 |
| CysB | 346-387 | 16.493 |
| Nac | 344-358 | 14.355 |
| H-NS | 305-319 | 12.977 |
| FNR | 376-397 | 12.354 |
| AgaR | 304-327 | 11.830 |
| CueR | 231-249 | 10.370 |
| IHF | 311-323 | 10.205 |
| DeoR | 69-84 | 9.575 |
| ArcA | 334-394 | 9.562 |
| DnaA | 364-372 | 9.440 |
| SoxS | 16-33 | 8.912 |
| NarP | 65-71 | 8.877 |
| TorR | 345-354 | 8.860 |
| MetR | 309-332 | 8.476 |
| MetJ | 110-117 | 7.907 |
| CRP | 328-349 | 7.722 |
| PhoP | 8-24 | 7.573 |
| CytR | 19-58 | 7.466 |
| FadR | 291-307 | 7.015 |
| XylR | 301-318 | 6.940 |
| ModE | 41-67 | 6.921 |
| IdnR | 352-367 | 6.866 |
| Fis | 297-317 | 6.783 |
| Fur | 376-390 | 6.781 |
| Lrp | 120-131 | 6.775 |
| Rob | 302-322 | 6.625 |
| MalT | 165-174 | 6.540 |
| ArgR | 299-314 | 6.271 |
| MarA | 266-286 | 6.062 |
| GntR | 357-376 | 5.969 |
| GadE | 304-323 | 5.861 |
| TyrR | 299-320 | 5.848 |
| NarL | 361-367 | 5.837 |
| UlaR | 314-333 | 5.622 |
| PurR | 245-260 | 5.595 |
| PspF | 315-331 | 5.565 |
| DcuR | 290-344 | 5.332 |
| NagC | 376-398 | 5.311 |
| CpxR | 245-259 | 5.283 |
| NorR | 323-339 | 5.189 |
| GcvA | 301-329 | 5.107 |
| Mlc | 308-330 | 5.065 |