| TF name | Position | PWM scan score |
| TyrR | 74-95 | 14.456 |
| H-NS | 136-150 | 14.390 |
| DnaA | 307-315 | 11.511 |
| OmpR | 352-371 | 11.352 |
| NagC | 335-357 | 10.534 |
| GadE | 350-369 | 10.063 |
| CpxR | 316-330 | 9.701 |
| MalT | 65-74 | 9.574 |
| FadR | 168-184 | 9.093 |
| NarP | 276-282 | 8.982 |
| AraC | 74-91 | 8.797 |
| DeoR | 131-146 | 8.653 |
| IHF | 348-360 | 8.197 |
| ArgR | 134-149 | 8.126 |
| NtrC | 152-168 | 7.788 |
| FNR | 78-99 | 7.738 |
| LacI | 270-290 | 7.717 |
| GntR | 225-244 | 7.711 |
| Lrp | 224-235 | 7.644 |
| GlpR | 338-357 | 7.602 |
| LexA | 109-128 | 7.245 |
| PhoB | 230-249 | 7.223 |
| Fis | 328-348 | 6.999 |
| RcsB | 267-280 | 6.967 |
| NarL | 271-277 | 6.854 |
| Mlc | 330-352 | 6.336 |
| AgaR | 125-148 | 6.172 |
| ArgP | 267-279 | 6.132 |
| FruR | 305-322 | 6.111 |
| ModE | 138-164 | 6.055 |
| MetJ | 21-28 | 5.884 |
| TorR | 328-337 | 5.666 |
| GalR | 265-280 | 5.453 |
| GalS | 265-280 | 5.453 |
| Ada | 284-311 | 5.178 |