| TF name | Position | PWM scan score |
| RhaS | 89-105 | 10.091 |
| H-NS | 335-349 | 9.327 |
| Nac | 87-101 | 8.814 |
| FadR | 301-317 | 8.755 |
| AgaR | 128-151 | 8.754 |
| NarP | 391-397 | 8.118 |
| Rob | 153-173 | 7.837 |
| ArgP | 5-17 | 7.419 |
| Lrp | 385-396 | 7.357 |
| CueR | 356-374 | 7.348 |
| NtrC | 332-348 | 7.183 |
| ModE | 136-162 | 7.129 |
| DnaA | 160-168 | 7.095 |
| IHF | 205-217 | 7.025 |
| MetJ | 279-286 | 6.829 |
| PurR | 181-196 | 6.677 |
| GalS | 288-303 | 6.544 |
| GalR | 288-303 | 6.544 |
| Fis | 77-97 | 6.492 |
| NarL | 347-353 | 6.388 |
| Ada | 65-92 | 6.382 |
| AraC | 329-346 | 6.249 |
| DeoR | 244-259 | 5.783 |
| PspF | 333-349 | 5.565 |
| PhoB | 283-302 | 5.510 |
| UxuR | 346-363 | 5.373 |
| GlpR | 135-154 | 5.283 |
| Mlc | 141-163 | 5.280 |
| SoxS | 100-117 | 5.184 |
| GadE | 109-128 | 5.094 |