| TF name | Position | PWM scan score |
| AraC | 360-377 | 10.876 |
| FNR | 174-195 | 10.481 |
| LacI | 232-252 | 9.562 |
| FadR | 285-301 | 9.441 |
| ArgP | 148-160 | 8.813 |
| NarL | 46-52 | 8.755 |
| MarA | 10-30 | 8.585 |
| PurR | 62-77 | 8.525 |
| H-NS | 299-313 | 8.358 |
| Nac | 43-57 | 8.068 |
| GntR | 36-55 | 7.248 |
| PhoP | 139-155 | 7.168 |
| RhaS | 126-142 | 6.851 |
| NtrC | 334-350 | 6.744 |
| SoxS | 168-185 | 6.607 |
| DnaA | 236-244 | 6.433 |
| Fis | 174-194 | 6.323 |
| UxuR | 150-167 | 5.993 |
| IHF | 141-153 | 5.982 |
| CRP | 171-192 | 5.547 |
| Lrp | 365-376 | 5.196 |
| GlpR | 56-75 | 5.137 |
| GalR | 127-142 | 5.019 |
| GalS | 127-142 | 5.019 |