| TF name | Position | PWM scan score |
| AraC | 260-277 | 13.576 |
| TyrR | 6-27 | 12.848 |
| MelR | 212-229 | 12.351 |
| CytR | 295-334 | 12.271 |
| Ada | 109-136 | 12.116 |
| NorR | 309-325 | 11.012 |
| OmpR | 155-174 | 10.758 |
| FNR | 369-390 | 10.738 |
| Fis | 375-395 | 9.615 |
| PhoB | 101-120 | 9.536 |
| DnaA | 373-381 | 9.352 |
| RcsB | 311-324 | 9.307 |
| ArcA | 273-333 | 9.229 |
| H-NS | 153-167 | 8.857 |
| TorR | 374-383 | 8.756 |
| CysB | 130-171 | 8.114 |
| Rob | 161-181 | 8.056 |
| ArgR | 288-303 | 8.036 |
| MetR | 116-139 | 7.823 |
| Nac | 367-381 | 7.798 |
| GlpR | 168-187 | 7.775 |
| NagC | 135-157 | 7.721 |
| Lrp | 262-273 | 7.687 |
| PhoP | 97-113 | 7.677 |
| IdnR | 91-106 | 7.619 |
| PspF | 382-398 | 7.315 |
| NarL | 309-315 | 7.283 |
| MarA | 148-168 | 7.220 |
| GntR | 96-115 | 7.164 |
| ModE | 79-105 | 6.780 |
| NarP | 334-340 | 6.598 |
| IHF | 288-300 | 6.520 |
| AgaR | 281-304 | 6.294 |
| GcvA | 197-225 | 6.270 |
| CRP | 299-320 | 5.928 |
| UlaR | 121-140 | 5.906 |
| MalT | 32-41 | 5.889 |
| DeoR | 142-157 | 5.480 |
| SoxS | 380-397 | 5.376 |
| Fur | 169-183 | 5.248 |