| TF name | Position | PWM scan score |
| ArcA | 205-265 | 15.380 |
| AgaR | 242-265 | 15.110 |
| NagC | 230-252 | 14.059 |
| CytR | 257-296 | 12.871 |
| GadE | 231-250 | 12.812 |
| Fur | 221-235 | 12.606 |
| MetR | 233-256 | 12.234 |
| IHF | 224-236 | 11.133 |
| FNR | 255-276 | 10.237 |
| RcsB | 244-257 | 9.956 |
| AraC | 236-253 | 9.757 |
| MarA | 118-138 | 9.712 |
| GcvA | 240-268 | 9.709 |
| SoxS | 218-235 | 9.690 |
| OxyR | 213-257 | 9.457 |
| H-NS | 243-257 | 9.113 |
| UlaR | 323-342 | 9.011 |
| ArgP | 231-243 | 8.957 |
| PhoP | 222-238 | 8.736 |
| OmpR | 175-194 | 8.682 |
| Fis | 224-244 | 8.643 |
| Lrp | 375-386 | 8.637 |
| GlpR | 117-136 | 8.486 |
| NarL | 260-266 | 8.326 |
| LacI | 64-84 | 8.130 |
| ModE | 54-80 | 8.123 |
| GntR | 227-246 | 7.883 |
| CRP | 252-273 | 7.846 |
| GalS | 291-306 | 7.618 |
| GalR | 291-306 | 7.618 |
| XylR | 372-389 | 7.521 |
| CpxR | 306-320 | 7.435 |
| DeoR | 322-337 | 7.328 |
| Nac | 228-242 | 6.677 |
| NarP | 193-199 | 6.654 |
| ArgR | 208-223 | 6.639 |
| RhaS | 22-38 | 6.422 |
| TorR | 15-24 | 6.143 |
| Mlc | 292-314 | 6.073 |
| Rob | 227-247 | 5.860 |
| PspF | 9-25 | 5.718 |
| PurR | 329-344 | 5.493 |
| CysB | 64-105 | 5.413 |
| MetJ | 193-200 | 5.328 |
| PhoB | 213-232 | 5.287 |
| NorR | 11-27 | 5.268 |
| DnaA | 234-242 | 5.155 |