| TF name | Position | PWM scan score |
| RcsB | 126-139 | 12.808 |
| MelR | 110-127 | 12.174 |
| NorR | 198-214 | 10.297 |
| MetR | 158-181 | 9.328 |
| TorR | 215-224 | 9.298 |
| RhaS | 205-221 | 9.253 |
| Ada | 349-376 | 9.213 |
| MalT | 4-13 | 9.077 |
| H-NS | 185-199 | 8.775 |
| FNR | 310-331 | 8.393 |
| MarA | 266-286 | 8.247 |
| MetJ | 222-229 | 7.945 |
| Lrp | 364-375 | 7.889 |
| PurR | 163-178 | 7.740 |
| ArcA | 152-212 | 7.526 |
| ModE | 205-231 | 7.466 |
| ArgP | 151-163 | 7.202 |
| NarP | 159-165 | 7.057 |
| XylR | 12-29 | 6.867 |
| Mlc | 334-356 | 6.772 |
| PhoP | 336-352 | 6.645 |
| GlpR | 309-328 | 6.513 |
| Fis | 149-169 | 6.458 |
| DnaA | 337-345 | 6.246 |
| CRP | 161-182 | 6.162 |
| ArgR | 322-337 | 6.099 |
| GalR | 305-320 | 6.026 |
| GalS | 305-320 | 6.026 |
| NarL | 230-236 | 5.902 |
| AraC | 297-314 | 5.799 |
| LacI | 336-356 | 5.757 |
| AgaR | 373-396 | 5.487 |
| Nac | 177-191 | 5.224 |
| Rob | 171-191 | 5.195 |
| DeoR | 156-171 | 5.172 |
| PspF | 323-339 | 5.163 |
| OmpR | 165-184 | 5.042 |