| TF name | Position | PWM scan score |
| PurR | 99-114 | 8.902 |
| OmpR | 356-375 | 8.433 |
| NarL | 87-93 | 8.142 |
| GalR | 204-219 | 7.797 |
| GalS | 204-219 | 7.797 |
| Lrp | 260-271 | 7.458 |
| TorR | 286-295 | 6.877 |
| MalT | 187-196 | 6.742 |
| UxuR | 349-366 | 6.395 |
| FNR | 344-365 | 5.959 |
| XylR | 82-99 | 5.937 |
| NarP | 147-153 | 5.875 |
| IHF | 237-249 | 5.672 |
| RhaS | 264-280 | 5.583 |
| Nac | 30-44 | 5.539 |
| CRP | 9-30 | 5.210 |
| Fis | 234-254 | 5.082 |
| H-NS | 242-256 | 5.002 |