| TF name | Position | PWM scan score |
| ArcA | 313-373 | 11.671 |
| Fur | 126-140 | 11.070 |
| PspF | 322-338 | 10.925 |
| OxyR | 299-343 | 10.477 |
| XylR | 12-29 | 10.456 |
| ModE | 126-152 | 10.156 |
| FNR | 14-35 | 9.598 |
| Ada | 320-347 | 9.506 |
| Mlc | 341-363 | 9.051 |
| TyrR | 326-347 | 9.011 |
| ArgP | 356-368 | 8.910 |
| IHF | 23-35 | 8.759 |
| AgaR | 376-399 | 8.615 |
| RcsB | 333-346 | 8.564 |
| MetR | 124-147 | 8.226 |
| FruR | 310-327 | 8.082 |
| Lrp | 340-351 | 7.760 |
| UlaR | 328-347 | 7.680 |
| NarL | 150-156 | 7.577 |
| NtrC | 352-368 | 7.544 |
| GlpR | 31-50 | 7.456 |
| ArgR | 353-368 | 7.285 |
| IdnR | 175-190 | 6.920 |
| OmpR | 359-378 | 6.779 |
| NagC | 344-366 | 6.666 |
| CRP | 23-44 | 6.641 |
| NarP | 5-11 | 6.524 |
| Fis | 112-132 | 6.506 |
| Rob | 364-384 | 6.413 |
| H-NS | 361-375 | 6.406 |
| MalT | 97-106 | 6.337 |
| CysB | 2-43 | 6.068 |
| Nac | 139-153 | 5.996 |
| MetJ | 147-154 | 5.910 |
| PurR | 262-277 | 5.772 |
| CpxR | 21-35 | 5.730 |
| TorR | 317-326 | 5.552 |
| NorR | 182-198 | 5.403 |
| DeoR | 17-32 | 5.282 |
| AraC | 314-331 | 5.281 |
| GadE | 365-384 | 5.174 |
| MarA | 42-62 | 5.140 |
| LacI | 42-62 | 5.011 |