| TF name | Position | PWM scan score |
| MelR | 351-368 | 12.843 |
| NarP | 117-123 | 10.661 |
| PhoB | 291-310 | 10.046 |
| MalT | 99-108 | 9.921 |
| Rob | 263-283 | 9.776 |
| Nac | 149-163 | 9.240 |
| PurR | 28-43 | 8.754 |
| DnaA | 17-25 | 8.389 |
| OmpR | 159-178 | 8.378 |
| XylR | 8-25 | 8.139 |
| Lrp | 144-155 | 8.025 |
| Mlc | 110-132 | 7.787 |
| GadE | 323-342 | 7.725 |
| ArgR | 287-302 | 7.122 |
| ArgP | 271-283 | 6.962 |
| FNR | 363-384 | 6.960 |
| IHF | 354-366 | 6.892 |
| PspF | 265-281 | 6.871 |
| NagC | 361-383 | 6.776 |
| NarL | 14-20 | 6.697 |
| LexA | 357-376 | 6.495 |
| TorR | 110-119 | 6.488 |
| Fis | 141-161 | 6.394 |
| CRP | 144-165 | 6.364 |
| GcvA | 288-316 | 6.232 |
| MarA | 179-199 | 6.115 |
| PhoP | 273-289 | 6.074 |
| GlpR | 353-372 | 6.045 |
| CpxR | 275-289 | 5.957 |
| RcsB | 289-302 | 5.566 |
| SoxS | 181-198 | 5.409 |
| GntR | 201-220 | 5.277 |
| H-NS | 358-372 | 5.273 |