| TF name | Position | PWM scan score |
| IHF | 387-399 | 8.883 |
| SoxS | 251-268 | 8.674 |
| TorR | 49-58 | 8.649 |
| ArgR | 383-398 | 8.574 |
| IdnR | 97-112 | 8.562 |
| DeoR | 12-27 | 8.178 |
| AraC | 174-191 | 7.938 |
| GlpR | 248-267 | 7.864 |
| UlaR | 350-369 | 7.655 |
| CueR | 301-319 | 7.554 |
| Nac | 54-68 | 7.170 |
| NarL | 331-337 | 6.907 |
| OmpR | 376-395 | 6.652 |
| RhaS | 365-381 | 6.316 |
| DnaA | 366-374 | 5.954 |
| Fis | 162-182 | 5.691 |
| Lrp | 385-396 | 5.536 |
| UxuR | 364-381 | 5.483 |
| H-NS | 168-182 | 5.371 |
| FadR | 75-91 | 5.312 |