| TF name | Position | PWM scan score |
| CueR | 118-136 | 13.124 |
| MarA | 90-110 | 9.376 |
| DeoR | 292-307 | 9.288 |
| OmpR | 180-199 | 8.955 |
| H-NS | 362-376 | 8.731 |
| SoxS | 249-266 | 8.124 |
| GalR | 303-318 | 8.001 |
| GalS | 303-318 | 8.001 |
| RcsB | 321-334 | 7.711 |
| Rob | 88-108 | 7.646 |
| Fis | 365-385 | 7.184 |
| PhoB | 219-238 | 6.862 |
| TorR | 320-329 | 6.531 |
| CpxR | 268-282 | 6.519 |
| NarP | 181-187 | 6.488 |
| IHF | 323-335 | 6.328 |
| PhoP | 267-283 | 6.261 |
| ArgR | 319-334 | 6.177 |
| GntR | 299-318 | 6.087 |
| NorR | 303-319 | 5.845 |
| GadE | 327-346 | 5.681 |
| CRP | 185-206 | 5.602 |
| AgaR | 314-337 | 5.545 |
| FNR | 256-277 | 5.427 |
| NarL | 309-315 | 5.366 |
| GlpR | 366-385 | 5.012 |