| TF name | Position | PWM scan score |
| PhoB | 347-366 | 12.933 |
| H-NS | 80-94 | 8.993 |
| MelR | 61-78 | 8.835 |
| IHF | 135-147 | 8.093 |
| OmpR | 241-260 | 8.077 |
| MarA | 23-43 | 7.845 |
| Lrp | 317-328 | 7.457 |
| UxuR | 300-317 | 7.370 |
| FNR | 129-150 | 7.356 |
| NarP | 293-299 | 7.162 |
| GcvA | 62-90 | 6.892 |
| ModE | 293-319 | 6.790 |
| DnaA | 32-40 | 6.709 |
| SoxS | 308-325 | 6.409 |
| CRP | 337-358 | 6.363 |
| Mlc | 238-260 | 6.287 |
| ArcA | 53-113 | 6.206 |
| TyrR | 236-257 | 6.177 |
| GalS | 198-213 | 6.116 |
| GalR | 198-213 | 6.116 |
| FadR | 61-77 | 6.100 |
| Fis | 125-145 | 6.064 |
| TorR | 33-42 | 5.970 |
| NarL | 141-147 | 5.902 |
| RcsB | 236-249 | 5.605 |
| MetJ | 15-22 | 5.548 |
| Rob | 164-184 | 5.420 |
| MetR | 336-359 | 5.129 |
| RhaS | 279-295 | 5.102 |
| PhoP | 304-320 | 5.094 |
| ArgP | 143-155 | 5.070 |