| TF name | Position | PWM scan score |
| ArcA | 143-203 | 15.937 |
| RcsB | 181-194 | 13.022 |
| FNR | 251-272 | 12.925 |
| H-NS | 267-281 | 12.321 |
| Lrp | 254-265 | 10.560 |
| OmpR | 134-153 | 10.410 |
| MelR | 199-216 | 10.363 |
| MetR | 141-164 | 10.242 |
| UlaR | 146-165 | 10.125 |
| DnaA | 259-267 | 9.952 |
| PhoP | 359-375 | 9.880 |
| ArgP | 54-66 | 9.647 |
| ModE | 69-95 | 9.593 |
| GadE | 142-161 | 9.333 |
| XylR | 180-197 | 9.171 |
| MetJ | 248-255 | 9.118 |
| IHF | 177-189 | 8.979 |
| Rob | 216-236 | 8.859 |
| FadR | 275-291 | 8.630 |
| GcvA | 178-206 | 8.377 |
| NtrC | 236-252 | 8.245 |
| PurR | 64-79 | 7.341 |
| NorR | 130-146 | 7.323 |
| CRP | 134-155 | 7.321 |
| Nac | 250-264 | 7.075 |
| GalS | 64-79 | 7.041 |
| GalR | 64-79 | 7.041 |
| PhoB | 159-178 | 7.033 |
| DeoR | 162-177 | 7.021 |
| CpxR | 153-167 | 6.942 |
| GlpR | 13-32 | 6.829 |
| SoxS | 138-155 | 6.796 |
| LacI | 372-392 | 6.778 |
| TyrR | 215-236 | 6.721 |
| UxuR | 257-274 | 6.708 |
| AraC | 178-195 | 6.699 |
| NarL | 356-362 | 6.696 |
| MalT | 201-210 | 6.568 |
| Fis | 137-157 | 6.264 |
| NarP | 331-337 | 6.205 |
| MarA | 40-60 | 6.185 |
| Fur | 137-151 | 6.120 |
| GntR | 135-154 | 6.026 |
| IdnR | 159-174 | 5.481 |
| TorR | 245-254 | 5.248 |
| OxyR | 155-199 | 5.066 |
| AgaR | 141-164 | 5.023 |