| TF name | Position | PWM scan score |
| LacI | 138-158 | 16.654 |
| ArcA | 337-397 | 10.740 |
| OmpR | 361-380 | 10.410 |
| PurR | 155-170 | 10.307 |
| MetR | 368-391 | 10.242 |
| UlaR | 373-392 | 10.125 |
| RcsB | 54-67 | 10.108 |
| ArgP | 281-293 | 9.647 |
| ModE | 296-322 | 9.593 |
| FNR | 364-385 | 9.502 |
| MalT | 64-73 | 9.365 |
| GadE | 369-388 | 9.333 |
| UxuR | 126-143 | 8.979 |
| PhoP | 372-388 | 8.970 |
| XylR | 265-282 | 8.448 |
| Nac | 46-60 | 7.931 |
| H-NS | 376-390 | 7.862 |
| Rob | 328-348 | 7.833 |
| MelR | 20-37 | 7.752 |
| DnaA | 369-377 | 7.502 |
| NorR | 357-373 | 7.323 |
| CRP | 361-382 | 7.321 |
| IHF | 370-382 | 7.164 |
| GalS | 291-306 | 7.041 |
| GalR | 291-306 | 7.041 |
| CpxR | 380-394 | 6.942 |
| AraC | 54-71 | 6.885 |
| GlpR | 240-259 | 6.829 |
| SoxS | 365-382 | 6.796 |
| Lrp | 181-192 | 6.539 |
| PspF | 196-212 | 6.297 |
| Fis | 364-384 | 6.264 |
| MetJ | 54-61 | 6.240 |
| MarA | 267-287 | 6.185 |
| Fur | 364-378 | 6.120 |
| GntR | 362-381 | 6.026 |
| FadR | 239-255 | 5.903 |
| NarL | 120-126 | 5.661 |
| IdnR | 289-304 | 5.435 |
| AgaR | 368-391 | 5.023 |