| TF name | Position | PWM scan score |
| NagC | 335-357 | 15.634 |
| CysB | 330-371 | 14.036 |
| GcvA | 343-371 | 12.860 |
| GlpR | 36-55 | 12.688 |
| Fur | 361-375 | 11.824 |
| CueR | 128-146 | 10.523 |
| GntR | 122-141 | 10.442 |
| ArcA | 314-374 | 10.380 |
| MarA | 142-162 | 9.839 |
| Lrp | 374-385 | 9.604 |
| UxuR | 367-384 | 9.547 |
| IHF | 326-338 | 9.489 |
| XylR | 325-342 | 9.481 |
| FNR | 361-382 | 9.247 |
| RcsB | 330-343 | 9.209 |
| AraC | 318-335 | 9.033 |
| OmpR | 374-393 | 8.992 |
| AgaR | 348-371 | 8.966 |
| UlaR | 341-360 | 8.756 |
| MetR | 351-374 | 8.714 |
| Fis | 371-391 | 8.658 |
| SoxS | 137-154 | 8.120 |
| H-NS | 374-388 | 7.846 |
| CpxR | 358-372 | 7.843 |
| Ada | 358-385 | 7.657 |
| ArgR | 145-160 | 7.505 |
| MelR | 317-334 | 7.333 |
| PurR | 258-273 | 7.287 |
| ArgP | 23-35 | 7.053 |
| TorR | 199-208 | 6.743 |
| DnaA | 270-278 | 6.741 |
| NtrC | 321-337 | 6.545 |
| PhoP | 289-305 | 6.524 |
| CRP | 326-347 | 6.234 |
| IdnR | 15-30 | 6.188 |
| MetJ | 358-365 | 6.040 |
| NarP | 55-61 | 5.835 |
| Nac | 219-233 | 5.678 |
| NarL | 373-379 | 5.435 |
| TyrR | 369-390 | 5.385 |
| MalT | 19-28 | 5.217 |
| DeoR | 47-62 | 5.157 |
| OxyR | 312-356 | 5.110 |
| PhoB | 338-357 | 5.094 |