| TF name | Position | PWM scan score |
| ArgR | 270-285 | 9.688 |
| GalS | 373-388 | 9.526 |
| GalR | 373-388 | 9.526 |
| GcvA | 86-114 | 9.125 |
| CpxR | 143-157 | 8.693 |
| MalT | 312-321 | 7.681 |
| FNR | 7-28 | 7.506 |
| TorR | 44-53 | 7.214 |
| MarA | 263-283 | 7.133 |
| IHF | 1-13 | 7.082 |
| H-NS | 272-286 | 7.034 |
| Fur | 114-128 | 6.751 |
| Lrp | 7-18 | 6.439 |
| NarP | 251-257 | 6.334 |
| Fis | 93-113 | 6.231 |
| RhaS | 124-140 | 6.226 |
| MetJ | 227-234 | 6.074 |
| FadR | 203-219 | 6.060 |
| Rob | 270-290 | 5.835 |
| NorR | 6-22 | 5.813 |
| NarL | 373-379 | 5.802 |
| PhoP | 248-264 | 5.530 |
| ArgP | 11-23 | 5.280 |
| Nac | 5-19 | 5.279 |
| IdnR | 289-304 | 5.265 |
| AraC | 1-18 | 5.177 |