| TF name | Position | PWM scan score |
| MarA | 290-310 | 10.385 |
| DeoR | 21-36 | 9.343 |
| GadE | 88-107 | 8.995 |
| AgaR | 329-352 | 8.909 |
| DnaA | 41-49 | 8.889 |
| ModE | 40-66 | 8.348 |
| Ada | 313-340 | 8.024 |
| MetJ | 254-261 | 7.644 |
| H-NS | 324-338 | 7.618 |
| IHF | 336-348 | 7.442 |
| Lrp | 36-47 | 7.428 |
| NarL | 349-355 | 7.147 |
| CRP | 19-40 | 7.005 |
| NarP | 29-35 | 6.703 |
| Fur | 330-344 | 6.491 |
| MalT | 118-127 | 6.389 |
| LacI | 285-305 | 5.598 |
| XylR | 325-342 | 5.344 |
| FNR | 22-43 | 5.296 |