| TF name | Position | PWM scan score |
| MalT | 329-338 | 10.328 |
| AgaR | 347-370 | 10.187 |
| RcsB | 132-145 | 10.036 |
| MelR | 236-253 | 9.629 |
| NtrC | 349-365 | 9.252 |
| Nac | 173-187 | 8.906 |
| SoxS | 201-218 | 8.884 |
| MarA | 11-31 | 8.415 |
| GadE | 21-40 | 7.970 |
| ArgP | 286-298 | 7.883 |
| GcvA | 9-37 | 7.779 |
| CueR | 64-82 | 7.475 |
| OxyR | 274-318 | 7.315 |
| Lrp | 209-220 | 7.303 |
| CytR | 179-218 | 7.190 |
| NarL | 176-182 | 7.107 |
| Fis | 113-133 | 7.054 |
| TyrR | 269-290 | 6.855 |
| UlaR | 5-24 | 6.814 |
| PhoP | 205-221 | 6.762 |
| TorR | 334-343 | 6.672 |
| Mlc | 194-216 | 6.638 |
| OmpR | 171-190 | 6.593 |
| IHF | 355-367 | 6.456 |
| FNR | 17-38 | 6.440 |
| DeoR | 20-35 | 6.374 |
| NagC | 196-218 | 6.314 |
| PspF | 13-29 | 5.888 |
| CRP | 321-342 | 5.629 |
| UxuR | 248-265 | 5.452 |
| AraC | 279-296 | 5.306 |
| CpxR | 136-150 | 5.287 |
| ModE | 160-186 | 5.173 |