| TF name | Position | PWM scan score |
| OmpR | 303-322 | 16.751 |
| H-NS | 327-341 | 11.657 |
| FNR | 307-328 | 11.560 |
| Lrp | 288-299 | 10.883 |
| PspF | 160-176 | 10.164 |
| IHF | 169-181 | 9.864 |
| CRP | 195-216 | 9.192 |
| Fis | 320-340 | 9.182 |
| NtrC | 324-340 | 9.080 |
| ArgR | 323-338 | 8.845 |
| Rob | 240-260 | 8.483 |
| TyrR | 188-209 | 8.452 |
| ArgP | 287-299 | 8.416 |
| GadE | 307-326 | 8.089 |
| NarP | 34-40 | 7.860 |
| ArcA | 171-231 | 7.550 |
| CpxR | 373-387 | 7.507 |
| DeoR | 111-126 | 7.504 |
| XylR | 165-182 | 7.474 |
| FadR | 66-82 | 7.298 |
| FruR | 246-263 | 7.036 |
| MarA | 70-90 | 7.002 |
| AgaR | 364-387 | 6.879 |
| SoxS | 35-52 | 6.671 |
| RcsB | 201-214 | 6.400 |
| GcvA | 311-339 | 6.385 |
| AraC | 321-338 | 6.354 |
| NorR | 162-178 | 6.290 |
| UlaR | 159-178 | 6.086 |
| NarL | 43-49 | 6.065 |
| GalR | 44-59 | 6.043 |
| GalS | 44-59 | 6.043 |
| Fur | 163-177 | 5.997 |
| TorR | 166-175 | 5.837 |
| Nac | 190-204 | 5.833 |
| MalT | 31-40 | 5.729 |
| CysB | 262-303 | 5.692 |
| ModE | 116-142 | 5.544 |
| UxuR | 242-259 | 5.186 |
| NagC | 27-49 | 5.147 |