| TF name | Position | PWM scan score |
| ArcA | 320-380 | 16.011 |
| NagC | 255-277 | 13.206 |
| ArgP | 268-280 | 11.576 |
| MarA | 43-63 | 11.376 |
| PhoP | 300-316 | 11.218 |
| IHF | 293-305 | 10.307 |
| Fis | 210-230 | 10.126 |
| RcsB | 255-268 | 9.955 |
| ModE | 261-287 | 9.822 |
| OmpR | 357-376 | 9.379 |
| H-NS | 272-286 | 9.107 |
| RhaS | 73-89 | 9.048 |
| Rob | 52-72 | 8.481 |
| PhoB | 371-390 | 8.369 |
| ArgR | 374-389 | 8.286 |
| NarL | 254-260 | 8.190 |
| CRP | 202-223 | 8.152 |
| DnaA | 384-392 | 8.146 |
| Mlc | 253-275 | 8.087 |
| CpxR | 302-316 | 8.077 |
| GalR | 44-59 | 8.015 |
| GalS | 44-59 | 8.015 |
| UlaR | 247-266 | 7.969 |
| SoxS | 215-232 | 7.931 |
| MetJ | 199-206 | 7.792 |
| DcuR | 312-366 | 7.676 |
| DeoR | 195-210 | 7.591 |
| MalT | 238-247 | 7.564 |
| FNR | 307-328 | 7.401 |
| FadR | 271-287 | 7.384 |
| Nac | 201-215 | 7.379 |
| GlpR | 251-270 | 7.312 |
| MelR | 290-307 | 7.258 |
| UxuR | 358-375 | 7.185 |
| NarP | 107-113 | 7.091 |
| IdnR | 312-327 | 6.953 |
| GadE | 369-388 | 6.949 |
| CysB | 261-302 | 6.654 |
| CytR | 251-290 | 6.572 |
| Ada | 177-204 | 6.453 |
| PspF | 354-370 | 6.417 |
| Lrp | 376-387 | 6.274 |
| Fur | 347-361 | 6.265 |
| XylR | 251-268 | 5.885 |
| GcvA | 234-262 | 5.496 |