| TF name | Position | PWM scan score |
| OmpR | 122-141 | 13.891 |
| Fis | 124-144 | 13.383 |
| PhoP | 175-191 | 12.281 |
| ArcA | 10-70 | 11.954 |
| Mlc | 46-68 | 11.691 |
| Rob | 155-175 | 11.621 |
| PhoB | 243-262 | 11.530 |
| MelR | 6-23 | 11.477 |
| DeoR | 213-228 | 11.278 |
| H-NS | 355-369 | 10.896 |
| NarP | 146-152 | 10.661 |
| ArgR | 39-54 | 10.378 |
| GcvA | 349-377 | 10.286 |
| GadE | 125-144 | 10.154 |
| MarA | 340-360 | 9.779 |
| FNR | 281-302 | 9.466 |
| IHF | 255-267 | 9.294 |
| ArgP | 61-73 | 9.292 |
| SoxS | 38-55 | 9.212 |
| TyrR | 253-274 | 8.764 |
| CRP | 47-68 | 8.518 |
| Fur | 226-240 | 8.314 |
| CysB | 256-297 | 8.170 |
| AraC | 63-80 | 8.009 |
| Nac | 383-397 | 7.810 |
| NarL | 84-90 | 7.336 |
| CytR | 259-298 | 7.278 |
| FadR | 216-232 | 7.021 |
| DnaA | 332-340 | 6.990 |
| LacI | 31-51 | 6.865 |
| GntR | 258-277 | 6.845 |
| MetJ | 19-26 | 6.810 |
| GlpR | 186-205 | 6.708 |
| RcsB | 63-76 | 6.678 |
| TorR | 333-342 | 6.394 |
| Lrp | 127-138 | 6.261 |
| PspF | 184-200 | 6.094 |
| UxuR | 289-306 | 5.874 |
| CpxR | 287-301 | 5.791 |
| XylR | 14-31 | 5.645 |
| NagC | 179-201 | 5.484 |