| TF name | Position | PWM scan score |
| PhoP | 3-19 | 12.281 |
| ArcA | 66-126 | 11.572 |
| PhoB | 71-90 | 11.530 |
| DeoR | 41-56 | 11.278 |
| OmpR | 88-107 | 11.152 |
| H-NS | 183-197 | 10.896 |
| NagC | 248-270 | 10.656 |
| GcvA | 177-205 | 10.286 |
| ArgR | 179-194 | 10.234 |
| MarA | 168-188 | 9.779 |
| GadE | 8-27 | 9.643 |
| FNR | 109-130 | 9.466 |
| AraC | 228-245 | 9.443 |
| IHF | 83-95 | 9.294 |
| SoxS | 170-187 | 8.931 |
| CysB | 216-257 | 8.875 |
| TyrR | 81-102 | 8.764 |
| ArgP | 82-94 | 8.518 |
| Fur | 54-68 | 8.314 |
| RhaS | 249-265 | 8.240 |
| Fis | 173-193 | 8.214 |
| DnaA | 334-342 | 8.102 |
| CRP | 128-149 | 7.814 |
| Nac | 211-225 | 7.810 |
| CytR | 87-126 | 7.278 |
| Rob | 40-60 | 7.260 |
| FadR | 44-60 | 7.021 |
| GalS | 331-346 | 6.953 |
| GalR | 331-346 | 6.953 |
| CueR | 339-357 | 6.880 |
| GntR | 86-105 | 6.845 |
| GlpR | 14-33 | 6.708 |
| NarP | 382-388 | 6.524 |
| NarL | 299-305 | 6.515 |
| TorR | 161-170 | 6.394 |
| LacI | 335-355 | 6.376 |
| RcsB | 298-311 | 6.320 |
| MelR | 202-219 | 6.248 |
| IdnR | 214-229 | 6.180 |
| PspF | 12-28 | 6.094 |
| UxuR | 117-134 | 5.874 |
| Lrp | 219-230 | 5.852 |
| CpxR | 115-129 | 5.791 |
| XylR | 226-243 | 5.723 |
| FruR | 262-279 | 5.049 |