| TF name | Position | PWM scan score |
| ArcA | 178-238 | 15.914 |
| CysB | 185-226 | 14.287 |
| GntR | 222-241 | 14.104 |
| IdnR | 89-104 | 13.815 |
| CaiF | 156-200 | 13.581 |
| DnaA | 40-48 | 12.188 |
| FNR | 63-84 | 11.785 |
| UlaR | 181-200 | 11.127 |
| ArgP | 336-348 | 11.001 |
| H-NS | 180-194 | 10.852 |
| NagC | 162-184 | 10.835 |
| AgaR | 376-399 | 10.484 |
| UxuR | 35-52 | 10.308 |
| CRP | 224-245 | 9.592 |
| Fis | 323-343 | 9.391 |
| IHF | 77-89 | 9.202 |
| Mlc | 173-195 | 8.893 |
| TorR | 382-391 | 8.822 |
| OmpR | 222-241 | 8.784 |
| ModE | 307-333 | 8.763 |
| DeoR | 272-287 | 8.629 |
| CpxR | 40-54 | 8.294 |
| FruR | 15-32 | 8.178 |
| RcsB | 217-230 | 8.156 |
| MarA | 160-180 | 8.150 |
| GadE | 81-100 | 8.098 |
| AraC | 184-201 | 8.091 |
| Lrp | 37-48 | 7.707 |
| PhoB | 267-286 | 7.491 |
| MetR | 302-325 | 7.410 |
| ArgR | 169-184 | 7.279 |
| Fur | 285-299 | 7.256 |
| OxyR | 104-148 | 7.248 |
| Rob | 233-253 | 7.046 |
| Nac | 65-79 | 6.685 |
| NarL | 2-8 | 6.678 |
| CytR | 190-229 | 6.639 |
| LexA | 373-392 | 6.624 |
| NarP | 154-160 | 6.524 |
| GcvA | 316-344 | 6.470 |
| MetJ | 15-22 | 6.452 |
| SoxS | 72-89 | 6.450 |
| MelR | 173-190 | 6.273 |
| GlpR | 297-316 | 6.171 |
| TyrR | 172-193 | 6.167 |
| XylR | 194-211 | 6.033 |
| LacI | 285-305 | 5.999 |
| NorR | 35-51 | 5.268 |
| DcuR | 277-331 | 5.167 |
| PurR | 280-295 | 5.138 |