| TF name | Position | PWM scan score |
| ArcA | 17-77 | 16.715 |
| Fis | 13-33 | 12.771 |
| Ada | 334-361 | 12.124 |
| SoxS | 93-110 | 11.642 |
| Fur | 239-253 | 11.304 |
| NagC | 143-165 | 10.779 |
| CpxR | 14-28 | 10.717 |
| OmpR | 242-261 | 10.716 |
| CRP | 34-55 | 10.572 |
| FNR | 13-34 | 10.522 |
| GadE | 244-263 | 10.319 |
| CysB | 283-324 | 10.169 |
| ArgR | 44-59 | 10.040 |
| IHF | 290-302 | 9.666 |
| RcsB | 294-307 | 9.663 |
| UlaR | 287-306 | 9.408 |
| MarA | 35-55 | 9.392 |
| PspF | 309-325 | 9.183 |
| Lrp | 16-27 | 8.946 |
| DeoR | 340-355 | 8.849 |
| GcvA | 285-313 | 8.837 |
| AgaR | 44-67 | 8.827 |
| OxyR | 29-73 | 8.788 |
| LexA | 14-33 | 8.779 |
| Mlc | 48-70 | 8.705 |
| CytR | 320-359 | 8.347 |
| MetJ | 117-124 | 8.120 |
| Rob | 276-296 | 8.037 |
| GntR | 119-138 | 8.011 |
| ArgP | 93-105 | 7.887 |
| H-NS | 244-258 | 7.857 |
| MetR | 144-167 | 7.774 |
| PhoB | 246-265 | 7.511 |
| NarP | 109-115 | 7.127 |
| DnaA | 97-105 | 6.944 |
| PhoP | 263-279 | 6.803 |
| TorR | 143-152 | 6.665 |
| DcuR | 250-304 | 6.205 |
| XylR | 335-352 | 6.111 |
| Nac | 126-140 | 5.812 |
| MelR | 86-103 | 5.778 |
| AraC | 346-363 | 5.537 |
| NorR | 180-196 | 5.450 |
| NarL | 57-63 | 5.255 |
| ModE | 355-381 | 5.083 |