| TF name | Position | PWM scan score |
| ArcA | 65-125 | 14.156 |
| Mlc | 107-129 | 13.037 |
| CysB | 90-131 | 11.507 |
| H-NS | 121-135 | 11.277 |
| FadR | 211-227 | 10.467 |
| SoxS | 138-155 | 9.687 |
| GntR | 224-243 | 9.530 |
| GadE | 188-207 | 8.908 |
| ModE | 218-244 | 8.898 |
| ArgP | 240-252 | 8.518 |
| Fis | 371-391 | 8.415 |
| MarA | 136-156 | 8.192 |
| NarP | 233-239 | 8.154 |
| OmpR | 352-371 | 8.050 |
| Lrp | 103-114 | 8.017 |
| IHF | 69-81 | 7.689 |
| XylR | 48-65 | 7.621 |
| Fur | 86-100 | 7.595 |
| PhoP | 130-146 | 7.551 |
| TyrR | 98-119 | 7.546 |
| CRP | 195-216 | 7.442 |
| ArgR | 377-392 | 7.397 |
| Rob | 350-370 | 7.333 |
| TorR | 68-77 | 7.222 |
| DnaA | 67-75 | 7.209 |
| PhoB | 372-391 | 7.057 |
| FNR | 101-122 | 7.054 |
| PspF | 52-68 | 7.037 |
| Nac | 113-127 | 6.676 |
| NorR | 101-117 | 6.653 |
| GcvA | 46-74 | 6.560 |
| UlaR | 101-120 | 6.528 |
| NarL | 240-246 | 6.515 |
| CytR | 84-123 | 6.430 |
| RcsB | 83-96 | 6.421 |
| CpxR | 351-365 | 5.932 |
| AgaR | 44-67 | 5.778 |
| GlpR | 133-152 | 5.527 |
| FruR | 254-271 | 5.116 |
| NagC | 369-391 | 5.052 |