| TF name | Position | PWM scan score |
| PurR | 33-48 | 14.974 |
| GadE | 136-155 | 14.006 |
| CysB | 332-373 | 13.147 |
| ArcA | 279-339 | 11.425 |
| ArgP | 210-222 | 11.097 |
| LexA | 340-359 | 10.437 |
| NagC | 120-142 | 10.033 |
| ArgR | 155-170 | 9.836 |
| Ada | 99-126 | 9.762 |
| TyrR | 86-107 | 9.743 |
| GlpR | 201-220 | 9.681 |
| TorR | 95-104 | 9.584 |
| OmpR | 300-319 | 9.426 |
| IHF | 254-266 | 9.012 |
| Fis | 122-142 | 8.394 |
| Nac | 301-315 | 8.190 |
| XylR | 321-338 | 7.931 |
| H-NS | 341-355 | 7.740 |
| AgaR | 268-291 | 7.330 |
| FNR | 299-320 | 7.204 |
| MetR | 235-258 | 7.164 |
| PhoP | 194-210 | 7.114 |
| RcsB | 370-383 | 6.984 |
| UlaR | 329-348 | 6.929 |
| GcvA | 305-333 | 6.812 |
| MarA | 294-314 | 6.562 |
| CpxR | 334-348 | 6.549 |
| NarP | 49-55 | 6.524 |
| PspF | 271-287 | 6.338 |
| Lrp | 143-154 | 6.159 |
| GntR | 336-355 | 5.974 |
| NarL | 386-392 | 5.837 |
| AraC | 153-170 | 5.828 |
| CytR | 119-158 | 5.797 |
| GalS | 125-140 | 5.759 |
| GalR | 125-140 | 5.759 |
| Mlc | 50-72 | 5.705 |
| MetJ | 285-292 | 5.671 |
| FhlA | 278-317 | 5.652 |
| Rob | 336-356 | 5.596 |
| NtrC | 224-240 | 5.591 |
| IdnR | 85-100 | 5.390 |
| SoxS | 202-219 | 5.095 |