| TF name | Position | PWM scan score |
| MelR | 163-180 | 13.659 |
| GcvA | 43-71 | 11.518 |
| TyrR | 66-87 | 11.446 |
| DnaA | 268-276 | 11.339 |
| ArgP | 261-273 | 11.166 |
| PurR | 380-395 | 11.045 |
| Rob | 371-391 | 10.492 |
| LexA | 73-92 | 10.437 |
| RcsB | 50-63 | 10.373 |
| H-NS | 306-320 | 10.361 |
| AgaR | 275-298 | 10.302 |
| IHF | 174-186 | 10.209 |
| ArgR | 115-130 | 9.944 |
| ModE | 15-41 | 9.287 |
| LacI | 292-312 | 8.777 |
| NagC | 279-301 | 8.761 |
| ArcA | 60-120 | 8.641 |
| DeoR | 327-342 | 8.558 |
| PhoB | 140-159 | 8.555 |
| Nac | 284-298 | 8.525 |
| IdnR | 197-212 | 8.483 |
| UxuR | 31-48 | 8.446 |
| GadE | 325-344 | 8.284 |
| XylR | 112-129 | 8.250 |
| AraC | 144-161 | 8.165 |
| OmpR | 165-184 | 8.098 |
| GlpR | 307-326 | 7.871 |
| PspF | 40-56 | 7.848 |
| Lrp | 262-273 | 7.772 |
| Ada | 162-189 | 7.772 |
| Mlc | 278-300 | 7.708 |
| NarP | 270-276 | 7.659 |
| NarL | 375-381 | 7.577 |
| FNR | 243-264 | 7.462 |
| TorR | 355-364 | 7.265 |
| FadR | 146-162 | 6.878 |
| CpxR | 249-263 | 6.632 |
| MarA | 107-127 | 6.618 |
| MetR | 195-218 | 6.544 |
| NorR | 145-161 | 6.289 |
| Fur | 113-127 | 6.226 |
| UlaR | 194-213 | 6.131 |
| CytR | 47-86 | 6.053 |
| Fis | 256-276 | 5.958 |
| CRP | 240-261 | 5.919 |
| SoxS | 220-237 | 5.761 |
| RhaS | 286-302 | 5.284 |
| FruR | 343-360 | 5.118 |
| GntR | 69-88 | 5.054 |